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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.18351s0261.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | WOX | ||||||||
Protein Properties | Length: 302aa MW: 34114.4 Da PI: 8.0055 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3e-19 | 35 | 95 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+t+t+eq+++L++l+++ r p+a+++++++++l +++ ++V++WFqN++a+e++ Bostr.18351s0261.1.p 35 TRWTPTTEQIRILKDLYYNsgIRSPTADQIQKITARLrqygKIEGKNVFYWFQNHKARERQ 95 8*****************8779*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.6 | 2.3e-37 | 33 | 97 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt+eQi+iL++ly+ sG+r+P++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ Bostr.18351s0261.1.p 33 TSTRWTPTTEQIRILKDLYYnSGIRSPTADQIQKITARLRQYGKIEGKNVFYWFQNHKARERQKK 97 789***************9779*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-7 | 10 | 95 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.13E-11 | 26 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.317 | 30 | 96 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-4 | 32 | 100 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-16 | 35 | 95 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.29E-6 | 35 | 97 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0080166 | Biological Process | stomium development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MEPLQNQHHH HQADQESGNN NKSGSGGYTC RQTSTRWTPT TEQIRILKDL YYNSGIRSPT 60 ADQIQKITAR LRQYGKIEGK NVFYWFQNHK ARERQKKRFN GTTMTTPSSS PNSVMMANDH 120 YHQHHPLLHH HHGVPMPRPA NSVNVKLNQD HHLYHDQNKS YPSFNNGNLN HASSGTECGA 180 VNASNNGYMS SHVYGSMEQD CSMNYNNVGG GWANMDHNHH YSSAPFNFFD RPKPLFGLEG 240 HQEEECGGDA YLEHRRTLPL FPMHGEDHIN GGSGAIWKYG QSDGRDCHGR GPCASLELRL 300 N* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00265 | DAP | Transfer from AT2G17950 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ012310 | 0.0 | AJ012310.1 Arabidopsis thaliana mRNA for WUSCHEL protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010467591.1 | 0.0 | PREDICTED: protein WUSCHEL | ||||
Swissprot | Q9SB92 | 1e-168 | WUS_ARATH; Protein WUSCHEL | ||||
TrEMBL | R0GAZ5 | 1e-175 | R0GAZ5_9BRAS; Uncharacterized protein | ||||
STRING | Bra039894.1-P | 1e-171 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5244 | 28 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 1e-157 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.18351s0261.1.p |