PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18351s0261.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WOX
Protein Properties Length: 302aa    MW: 34114.4 Da    PI: 8.0055
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18351s0261.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33e-193595357
                          --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          +R+t+t+eq+++L++l+++   r p+a+++++++++l    +++ ++V++WFqN++a+e++
  Bostr.18351s0261.1.p 35 TRWTPTTEQIRILKDLYYNsgIRSPTADQIQKITARLrqygKIEGKNVFYWFQNHKARERQ 95
                          8*****************8779*************************************97 PP
2Wus_type_Homeobox115.62.3e-373397265
     Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                          ++tRWtPt+eQi+iL++ly+ sG+r+P++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  Bostr.18351s0261.1.p 33 TSTRWTPTTEQIRILKDLYYnSGIRSPTADQIQKITARLRQYGKIEGKNVFYWFQNHKARERQKK 97
                          789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-71095IPR009057Homeodomain-like
SuperFamilySSF466895.13E-1126100IPR009057Homeodomain-like
PROSITE profilePS5007110.3173096IPR001356Homeobox domain
SMARTSM003892.1E-432100IPR001356Homeobox domain
PfamPF000461.4E-163595IPR001356Homeobox domain
CDDcd000864.29E-63597No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEPLQNQHHH HQADQESGNN NKSGSGGYTC RQTSTRWTPT TEQIRILKDL YYNSGIRSPT  60
ADQIQKITAR LRQYGKIEGK NVFYWFQNHK ARERQKKRFN GTTMTTPSSS PNSVMMANDH  120
YHQHHPLLHH HHGVPMPRPA NSVNVKLNQD HHLYHDQNKS YPSFNNGNLN HASSGTECGA  180
VNASNNGYMS SHVYGSMEQD CSMNYNNVGG GWANMDHNHH YSSAPFNFFD RPKPLFGLEG  240
HQEEECGGDA YLEHRRTLPL FPMHGEDHIN GGSGAIWKYG QSDGRDCHGR GPCASLELRL  300
N*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0123100.0AJ012310.1 Arabidopsis thaliana mRNA for WUSCHEL protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467591.10.0PREDICTED: protein WUSCHEL
SwissprotQ9SB921e-168WUS_ARATH; Protein WUSCHEL
TrEMBLR0GAZ51e-175R0GAZ5_9BRAS; Uncharacterized protein
STRINGBra039894.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52442847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-157WOX family protein